reader_legacy

Legacy reader helpers for BrightEyes MCS HDF5 files.

class MCSMetadata(h5_file)[source]

Bases: object

Metadata read from a BrightEyes MCS HDF5 file.

Print()[source]: Print metadata fields using the legacy method name.

property dfd_freq: DFD laser cycle frequency in MHz when it can be inferred.

property dfd_nbins: DFD histogram bin count when it can be inferred.

property duration: Measurement duration in seconds.

property dx: Pixel size along x in micrometers.

property dy: Pixel size along y in micrometers.

property dz: Pixel size along z in micrometers.

property framerate: Frame rate in hertz.

property frametime: Frame duration in seconds.

property ndatapoints: Total number of transferred words.

property nmicroim: Total number of microimages read during the measurement.

static parse_dfd_metadata_from_bitfile_name(bitfile='', default_cycle_mhz=40)[source]: Infer DFD metadata from a bitfile name token like 40M91.

property pxdwelltime: Pixel dwell time in microseconds.

property pxsizes: Pixel sizes in z, y, x order.

property pxszizes: Pixel sizes in z, y, x order, preserving the legacy attribute name.

load(fname, key='data', data_format='numpy')[source]: Load a dataset and metadata from a BrightEyes MCS HDF5 file.

metadata: alias of MCSMetadata

metadata_load(fname)[source]: Load metadata from a BrightEyes MCS HDF5 file.

metadata_print(fname)[source]: Print metadata from a BrightEyes MCS HDF5 file.